PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147554.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 301aa    MW: 33272.3 Da    PI: 8.4521
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.5e-1573155186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ +++Li+a  ++ ++ ++g lk+++W ev++ +    + ++ ++ +qCk++++ ++k+yk++k+ ++       s++++f++le
  XP_009147554.1  73 CWSEEATKVLINAWGDRFSEPGKGTLKQQQWHEVAEIVnssGQCKYAKTDVQCKNRIDTVKKKYKQEKAKNGP------SKWAFFKKLE 155
                     7*************************************7666677899***********************97......58******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-2372157No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMEEEDETPS QQSPRDSLSP APILPTSNVT VASATKPPPS SSSQSPLALV VQTPSVNRNG  60
RIGGGGGGGR DDCWSEEATK VLINAWGDRF SEPGKGTLKQ QQWHEVAEIV NSSGQCKYAK  120
TDVQCKNRID TVKKKYKQEK AKNGPSKWAF FKKLESLIGG GGKAHVGGRS SGPMRWHFRK  180
RSASESESES EPERSAESLP PPQPLLPKRV KMGESGVGDV AKAILGFTEA YEKAETAKLK  240
LMMELEKERM KFAKEMELQR MQFLKTQMEI TRNNQEEERS KRDGDDDDDD RNVKNNGDVS  300
S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.115930.0flower| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9738450.0DQ973845.1 Brassica napus clone PBCESTNA20 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147554.10.0PREDICTED: uncharacterized protein LOC103871083
SwissprotQ9SYG21e-116ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLM4FA460.0M4FA46_BRARP; Uncharacterized protein
STRINGBra037960.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.11e-916B-interacting protein 1-like 1